Serveur d'exploration SRAS

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

First Report of Coronaviruses in Northern European Bats.

Identifieur interne : 000637 ( 2020/Analysis ); précédent : 000636; suivant : 000638

First Report of Coronaviruses in Northern European Bats.

Auteurs : Ilkka Kivistö [Finlande] ; Eeva-Maria Tidenberg [Finlande] ; Thomas Lilley [Finlande] ; Kati Suominen [Finlande] ; Kristian M. Forbes [États-Unis] ; Olli Vapalahti [Finlande] ; Anita Huovilainen [Finlande] ; Tarja Sironen [Finlande]

Source :

RBID : pubmed:31503522

Abstract

Coronaviruses (CoVs) represent a global public health threat, exemplified by the severe acute respiratory syndrome (SARS) and Middle East respiratory syndrome (MERS) outbreaks. Using fecal samples collected from five bat species between 2014 and 2016 in Finland and RT-PCR, RT-qPCR, and NGS, we identified CoVs in 10 of 79 (13%) samples, including two novel bat species-CoV relationships. Phylogenetic analysis revealed Alphacoronavirus and Betacoronavirus species clustered among previously identified bat and human viruses. These results expand the known northern distribution and host species range of bat-borne CoVs.

DOI: 10.1089/vbz.2018.2367
PubMed: 31503522


Affiliations:


Links toward previous steps (curation, corpus...)


Links to Exploration step

pubmed:31503522

Le document en format XML

<record>
<TEI>
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">First Report of Coronaviruses in Northern European Bats.</title>
<author>
<name sortKey="Kivisto, Ilkka" sort="Kivisto, Ilkka" uniqKey="Kivisto I" first="Ilkka" last="Kivistö">Ilkka Kivistö</name>
<affiliation wicri:level="4">
<nlm:affiliation>Department of Virology, University of Helsinki, Helsinki, Finland.</nlm:affiliation>
<country xml:lang="fr">Finlande</country>
<wicri:regionArea>Department of Virology, University of Helsinki, Helsinki</wicri:regionArea>
<orgName type="university">Université d'Helsinki</orgName>
<placeName>
<settlement type="city">Helsinki</settlement>
<region type="région" nuts="2">Uusimaa</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Tidenberg, Eeva Maria" sort="Tidenberg, Eeva Maria" uniqKey="Tidenberg E" first="Eeva-Maria" last="Tidenberg">Eeva-Maria Tidenberg</name>
<affiliation wicri:level="1">
<nlm:affiliation>Zoology Unit, Finnish Museum of Natural History, Helsinki, Finland.</nlm:affiliation>
<country xml:lang="fr">Finlande</country>
<wicri:regionArea>Zoology Unit, Finnish Museum of Natural History, Helsinki</wicri:regionArea>
<wicri:noRegion>Helsinki</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Lilley, Thomas" sort="Lilley, Thomas" uniqKey="Lilley T" first="Thomas" last="Lilley">Thomas Lilley</name>
<affiliation wicri:level="1">
<nlm:affiliation>Zoology Unit, Finnish Museum of Natural History, Helsinki, Finland.</nlm:affiliation>
<country xml:lang="fr">Finlande</country>
<wicri:regionArea>Zoology Unit, Finnish Museum of Natural History, Helsinki</wicri:regionArea>
<wicri:noRegion>Helsinki</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Suominen, Kati" sort="Suominen, Kati" uniqKey="Suominen K" first="Kati" last="Suominen">Kati Suominen</name>
<affiliation wicri:level="1">
<nlm:affiliation>Zoology Unit, Finnish Museum of Natural History, Helsinki, Finland.</nlm:affiliation>
<country xml:lang="fr">Finlande</country>
<wicri:regionArea>Zoology Unit, Finnish Museum of Natural History, Helsinki</wicri:regionArea>
<wicri:noRegion>Helsinki</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Forbes, Kristian M" sort="Forbes, Kristian M" uniqKey="Forbes K" first="Kristian M" last="Forbes">Kristian M. Forbes</name>
<affiliation wicri:level="2">
<nlm:affiliation>Department of Biological Sciences, University of Arkansas, Fayetteville, Arkansas.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName>
<region type="state">Arkansas</region>
</placeName>
<wicri:cityArea>Department of Biological Sciences, University of Arkansas, Fayetteville</wicri:cityArea>
</affiliation>
</author>
<author>
<name sortKey="Vapalahti, Olli" sort="Vapalahti, Olli" uniqKey="Vapalahti O" first="Olli" last="Vapalahti">Olli Vapalahti</name>
<affiliation wicri:level="4">
<nlm:affiliation>Department of Virology, University of Helsinki, Helsinki, Finland.</nlm:affiliation>
<country xml:lang="fr">Finlande</country>
<wicri:regionArea>Department of Virology, University of Helsinki, Helsinki</wicri:regionArea>
<orgName type="university">Université d'Helsinki</orgName>
<placeName>
<settlement type="city">Helsinki</settlement>
<region type="région" nuts="2">Uusimaa</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Huovilainen, Anita" sort="Huovilainen, Anita" uniqKey="Huovilainen A" first="Anita" last="Huovilainen">Anita Huovilainen</name>
<affiliation wicri:level="1">
<nlm:affiliation>Laboratory and Research Division, Finnish Food Authority, Helsinki, Finland.</nlm:affiliation>
<country xml:lang="fr">Finlande</country>
<wicri:regionArea>Laboratory and Research Division, Finnish Food Authority, Helsinki</wicri:regionArea>
<wicri:noRegion>Helsinki</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Sironen, Tarja" sort="Sironen, Tarja" uniqKey="Sironen T" first="Tarja" last="Sironen">Tarja Sironen</name>
<affiliation wicri:level="4">
<nlm:affiliation>Department of Virology, University of Helsinki, Helsinki, Finland.</nlm:affiliation>
<country xml:lang="fr">Finlande</country>
<wicri:regionArea>Department of Virology, University of Helsinki, Helsinki</wicri:regionArea>
<orgName type="university">Université d'Helsinki</orgName>
<placeName>
<settlement type="city">Helsinki</settlement>
<region type="région" nuts="2">Uusimaa</region>
</placeName>
</affiliation>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">PubMed</idno>
<date when="2020">2020</date>
<idno type="RBID">pubmed:31503522</idno>
<idno type="pmid">31503522</idno>
<idno type="doi">10.1089/vbz.2018.2367</idno>
<idno type="wicri:Area/PubMed/Corpus">000875</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000875</idno>
<idno type="wicri:Area/PubMed/Curation">000875</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">000875</idno>
<idno type="wicri:Area/PubMed/Checkpoint">000506</idno>
<idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">000506</idno>
<idno type="wicri:Area/Ncbi/Merge">003083</idno>
<idno type="wicri:Area/Ncbi/Curation">003083</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">003083</idno>
<idno type="wicri:Area/Main/Merge">000637</idno>
<idno type="wicri:Area/Main/Curation">000637</idno>
<idno type="wicri:Area/Main/Exploration">000637</idno>
<idno type="wicri:Area/2020/Extraction">000637</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en">First Report of Coronaviruses in Northern European Bats.</title>
<author>
<name sortKey="Kivisto, Ilkka" sort="Kivisto, Ilkka" uniqKey="Kivisto I" first="Ilkka" last="Kivistö">Ilkka Kivistö</name>
<affiliation wicri:level="4">
<nlm:affiliation>Department of Virology, University of Helsinki, Helsinki, Finland.</nlm:affiliation>
<country xml:lang="fr">Finlande</country>
<wicri:regionArea>Department of Virology, University of Helsinki, Helsinki</wicri:regionArea>
<orgName type="university">Université d'Helsinki</orgName>
<placeName>
<settlement type="city">Helsinki</settlement>
<region type="région" nuts="2">Uusimaa</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Tidenberg, Eeva Maria" sort="Tidenberg, Eeva Maria" uniqKey="Tidenberg E" first="Eeva-Maria" last="Tidenberg">Eeva-Maria Tidenberg</name>
<affiliation wicri:level="1">
<nlm:affiliation>Zoology Unit, Finnish Museum of Natural History, Helsinki, Finland.</nlm:affiliation>
<country xml:lang="fr">Finlande</country>
<wicri:regionArea>Zoology Unit, Finnish Museum of Natural History, Helsinki</wicri:regionArea>
<wicri:noRegion>Helsinki</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Lilley, Thomas" sort="Lilley, Thomas" uniqKey="Lilley T" first="Thomas" last="Lilley">Thomas Lilley</name>
<affiliation wicri:level="1">
<nlm:affiliation>Zoology Unit, Finnish Museum of Natural History, Helsinki, Finland.</nlm:affiliation>
<country xml:lang="fr">Finlande</country>
<wicri:regionArea>Zoology Unit, Finnish Museum of Natural History, Helsinki</wicri:regionArea>
<wicri:noRegion>Helsinki</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Suominen, Kati" sort="Suominen, Kati" uniqKey="Suominen K" first="Kati" last="Suominen">Kati Suominen</name>
<affiliation wicri:level="1">
<nlm:affiliation>Zoology Unit, Finnish Museum of Natural History, Helsinki, Finland.</nlm:affiliation>
<country xml:lang="fr">Finlande</country>
<wicri:regionArea>Zoology Unit, Finnish Museum of Natural History, Helsinki</wicri:regionArea>
<wicri:noRegion>Helsinki</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Forbes, Kristian M" sort="Forbes, Kristian M" uniqKey="Forbes K" first="Kristian M" last="Forbes">Kristian M. Forbes</name>
<affiliation wicri:level="2">
<nlm:affiliation>Department of Biological Sciences, University of Arkansas, Fayetteville, Arkansas.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName>
<region type="state">Arkansas</region>
</placeName>
<wicri:cityArea>Department of Biological Sciences, University of Arkansas, Fayetteville</wicri:cityArea>
</affiliation>
</author>
<author>
<name sortKey="Vapalahti, Olli" sort="Vapalahti, Olli" uniqKey="Vapalahti O" first="Olli" last="Vapalahti">Olli Vapalahti</name>
<affiliation wicri:level="4">
<nlm:affiliation>Department of Virology, University of Helsinki, Helsinki, Finland.</nlm:affiliation>
<country xml:lang="fr">Finlande</country>
<wicri:regionArea>Department of Virology, University of Helsinki, Helsinki</wicri:regionArea>
<orgName type="university">Université d'Helsinki</orgName>
<placeName>
<settlement type="city">Helsinki</settlement>
<region type="région" nuts="2">Uusimaa</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Huovilainen, Anita" sort="Huovilainen, Anita" uniqKey="Huovilainen A" first="Anita" last="Huovilainen">Anita Huovilainen</name>
<affiliation wicri:level="1">
<nlm:affiliation>Laboratory and Research Division, Finnish Food Authority, Helsinki, Finland.</nlm:affiliation>
<country xml:lang="fr">Finlande</country>
<wicri:regionArea>Laboratory and Research Division, Finnish Food Authority, Helsinki</wicri:regionArea>
<wicri:noRegion>Helsinki</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Sironen, Tarja" sort="Sironen, Tarja" uniqKey="Sironen T" first="Tarja" last="Sironen">Tarja Sironen</name>
<affiliation wicri:level="4">
<nlm:affiliation>Department of Virology, University of Helsinki, Helsinki, Finland.</nlm:affiliation>
<country xml:lang="fr">Finlande</country>
<wicri:regionArea>Department of Virology, University of Helsinki, Helsinki</wicri:regionArea>
<orgName type="university">Université d'Helsinki</orgName>
<placeName>
<settlement type="city">Helsinki</settlement>
<region type="région" nuts="2">Uusimaa</region>
</placeName>
</affiliation>
</author>
</analytic>
<series>
<title level="j">Vector borne and zoonotic diseases (Larchmont, N.Y.)</title>
<idno type="eISSN">1557-7759</idno>
<imprint>
<date when="2020" type="published">2020</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass></textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">Coronaviruses (CoVs) represent a global public health threat, exemplified by the severe acute respiratory syndrome (SARS) and Middle East respiratory syndrome (MERS) outbreaks. Using fecal samples collected from five bat species between 2014 and 2016 in Finland and RT-PCR, RT-qPCR, and NGS, we identified CoVs in 10 of 79 (13%) samples, including two novel bat species-CoV relationships. Phylogenetic analysis revealed
<i>Alphacoronavirus</i>
and
<i>Betacoronavirus</i>
species clustered among previously identified bat and human viruses. These results expand the known northern distribution and host species range of bat-borne CoVs.</div>
</front>
</TEI>
<affiliations>
<list>
<country>
<li>Finlande</li>
<li>États-Unis</li>
</country>
<region>
<li>Arkansas</li>
<li>Uusimaa</li>
</region>
<settlement>
<li>Helsinki</li>
</settlement>
<orgName>
<li>Université d'Helsinki</li>
</orgName>
</list>
<tree>
<country name="Finlande">
<region name="Uusimaa">
<name sortKey="Kivisto, Ilkka" sort="Kivisto, Ilkka" uniqKey="Kivisto I" first="Ilkka" last="Kivistö">Ilkka Kivistö</name>
</region>
<name sortKey="Huovilainen, Anita" sort="Huovilainen, Anita" uniqKey="Huovilainen A" first="Anita" last="Huovilainen">Anita Huovilainen</name>
<name sortKey="Lilley, Thomas" sort="Lilley, Thomas" uniqKey="Lilley T" first="Thomas" last="Lilley">Thomas Lilley</name>
<name sortKey="Sironen, Tarja" sort="Sironen, Tarja" uniqKey="Sironen T" first="Tarja" last="Sironen">Tarja Sironen</name>
<name sortKey="Suominen, Kati" sort="Suominen, Kati" uniqKey="Suominen K" first="Kati" last="Suominen">Kati Suominen</name>
<name sortKey="Tidenberg, Eeva Maria" sort="Tidenberg, Eeva Maria" uniqKey="Tidenberg E" first="Eeva-Maria" last="Tidenberg">Eeva-Maria Tidenberg</name>
<name sortKey="Vapalahti, Olli" sort="Vapalahti, Olli" uniqKey="Vapalahti O" first="Olli" last="Vapalahti">Olli Vapalahti</name>
</country>
<country name="États-Unis">
<region name="Arkansas">
<name sortKey="Forbes, Kristian M" sort="Forbes, Kristian M" uniqKey="Forbes K" first="Kristian M" last="Forbes">Kristian M. Forbes</name>
</region>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Sante/explor/SrasV1/Data/2020/Analysis
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000637 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/2020/Analysis/biblio.hfd -nk 000637 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Sante
   |area=    SrasV1
   |flux=    2020
   |étape=   Analysis
   |type=    RBID
   |clé=     pubmed:31503522
   |texte=   First Report of Coronaviruses in Northern European Bats.
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/2020/Analysis/RBID.i   -Sk "pubmed:31503522" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/2020/Analysis/biblio.hfd   \
       | NlmPubMed2Wicri -a SrasV1 

Wicri

This area was generated with Dilib version V0.6.33.
Data generation: Tue Apr 28 14:49:16 2020. Site generation: Sat Mar 27 22:06:49 2021